species:   Scscl
pid:       PID1752
parent:    Ssc-milR-228
paralog:   
locus:     NW_001820832.1:432472-432537
matures:   ['UGGAGAUGAUGGAACCUCGA', 'GAUCCAUCGCCCAUA']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820832.1:432472-432537

6 out of bounds
11 alignments
10 proper strand
10 stranded perfect matches

*********************                            *****************
UUGGAGAUGAUGGAACCUCGACUUGAGCAAGGAGAGACCUGUUUGCAAGUAGAUCCAUCGCCCAUA
.(((.(.(((((((...((.((((..(((((.((....)).))))))))).)))))))))))))..
-UGGAGAUGAUGGAACCUCGA--------------------------------------------- l=20 a=4 c
---------------------------------------------------GAUCCAUCGCCCAUA l=15 a=0 c*
-UGGAGAUGAUGGAACCUCGA--------------------------------------------- l=20 a=4 ma
---------------------------------------------------GAUCCAUCGCCCAUA l=15 a=0 ma*

-UGGAGAUGAUGGAACCUCGA--------------------------------------------- l=20 a=4 (c,ma)
-UGGAGAUGAUGGAACCUCGAC-------------------------------------------- l=21 a=1 
-UGGAGAUGAUGGAACCUCGACU------------------------------------------- l=22 a=1 
----------UGGAACCUCGACUUGAGCAAGG---------------------------------- l=22 a=1 
-----------------UCGACUUGAGCAAGGAGAGA----------------------------- l=20 a=1 
----------------------UUGAGCAAGGAGAGACCUGUU----------------------- l=21 a=1 
----------------------UUGAGCAAGGAGAGACCUGUUU---------------------- l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111000
fn-111
